Consensus statement from the first RdRp Summit : advancing RNA virus discovery at scale across communities

Affiliation
Fruit Biology and Pathology Unit, University of Bordeaux, INRAE ,Bordeaux ,France
Charon, Justine;
Affiliation
Division of Virology, Department of Pathology, Addenbrookes Hospital, University of Cambridge ,Cambridge ,United Kingdom
Olendraite, Ingrida;
Affiliation
Istituto per la Protezione Sostenibile Delle Piante, CNR ,Torino ,Italy
Forgia, Marco;
Affiliation
Institute for Experimental Virology, TWINCORE Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Hannover Medical School (MHH) and the Helmholtz Centre for Infection Research (HZI) ,Hannover ,Germany
Chong, Li Chuin;
Affiliation
Department of Plant Pathology, University of California, Davis ,Davis, CA ,United States
Hillary, Luke S.;
Affiliation
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory ,Berkeley, CA ,United States
Roux, Simon;
Affiliation
Bioinformatics Group, Wageningen University ,Wageningen ,Netherlands
Kupczok, Anne;
Affiliation
Instituto de Patología Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria (IPAVE, CIAP, INTA) ,Córdoba ,Argentina
Debat, Humberto;
Affiliation
Department of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University ,Osaka ,Japan
Sakaguchi, Shoichi;
Affiliation
University of Liège, Gembloux AgroBioTech - TERRA ,Gembloux ,Belgium
Tahzima, Rachid;
Affiliation
Department of Molecular Life Science, Tokai University School of Medicine ,Isehara ,Japan
Nakagawa, So;
Affiliation
Department of Molecular Genetics, University of Toronto ,Toronto, ON ,Canada
Babaian, Artem;
Affiliation
Institute of Technology, University of Tartu ,Tartu ,Estonia
Abroi, Aare;
Affiliation
Instituto de Patología Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria (IPAVE, CIAP, INTA) ,Córdoba ,Argentina
Bejerman, Nicolas;
Affiliation
Ecology, Diagnostics and Genetic Resources of Agriculturally Important Viruses, Fungi and Phytoplasmas, Crop Research Institute ,Prague ,Czechia
Ben Mansour, Karima;
Affiliation
Division of Virology, Department of Pathology, Addenbrookes Hospital, University of Cambridge ,Cambridge ,United Kingdom
Brown, Katherine;
Affiliation
Archaeal Virology Unit, Institut Pasteur, Université Paris Cité, CNRS ,Paris ,France
Butkovic, Anamarija;
Affiliation
Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC) - Universitat Politècnica de València (UPV) ,València ,Spain
Cervera, Amelia;
Affiliation
ASTRE, CIRAD, INRAE, University of Montpellier ,Montpellier ,France
Charriat, Florian;
Affiliation
Department of Electrical Engineering, City University of Hong Kong ,Kowloon ,Hong Kong SAR, China
Chen, Guowei;
Affiliation
School of Agriculture, Meiji University ,Kawasaki ,Japan
Chiba, Yuto;
Affiliation
KU Leuven, Department of Microbiology, Immunology, and Transplantation, Rega Institute, Division of Clinical and Epidemiological Virology, Laboratory of Viral Metagenomics ,Leuven ,Belgium
De Coninck, Lander;
Affiliation
Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki ,Helsinki ,Finland
Demina, Tatiana;
Affiliation
Department of Oceanography and Global Change, Centro Oceanográfico de Málaga (IEO-CSIC) ,Fuengirola ,Spain
Dominguez-Huerta, Guillermo;
Affiliation
Department of Microbiology and Immunology, University of Otago ,Dunedin ,New Zealand
Dubrulle, Jeremy;
Affiliation
ASTRE, CIRAD, INRAE, University of Montpellier ,Montpellier ,France
Gutierrez, Serafin;
Affiliation
Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney ,Sydney, NSW ,Australia
Harvey, Erin;
Affiliation
Molecular Virology Laboratory, ICAR-National Research Centre for Banana ,Tiruchirappalli, Tamil Nadu ,India
Jayaraj Mallika, Fhilmar Raj;
Affiliation
Bioinformatics Group, Wageningen University ,Wageningen ,Netherlands
Karapliafis, Dimitris;
Affiliation
College of Marine Science, University of South Florida ,St Petersburg, FL ,United States
Lim, Shen Jean;
Affiliation
Bioinformatics Centre, SP Pune University ,Pune ,India
Kasibhatla, Sunitha Manjari;
Affiliation
Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney ,Sydney, NSW ,Australia
Mifsud, Jonathon C. O.;
Affiliation
Research Centre for Bioscience and Nanoscience, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) ,Yokosuka ,Japan
Nishimura, Yosuke;
Affiliation
Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney ,Sydney, NSW ,Australia
Ortiz-Baez, Ayda Susana;
Affiliation
Department of Botany and Plant Pathology, Oregon State University ,Corvallis, OR ,United States
Raco, Milica;
Affiliation
Paul G. Allen School for Global Health, Washington State University ,Pullman, WA ,United States
Rivero, Ricardo;
Affiliation
Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney ,Sydney, NSW ,Australia
Sadiq, Sabrina;
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1327634309
Affiliation
Bioinformatics/High-Throughput Analysis, Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena ,Jena ,Germany
Saghaei, Shahram;
Affiliation
KwaZulu-Natal Research and Innovation Sequencing Platform (KRISP), UKZN ,Durban ,South Africa
San, James Emmanuel;
Affiliation
Research Department, Flanders Marine Institute (VLIZ), InnovOcean Site ,Ostend ,Belgium
Shaikh, Hisham Mohammed;
Affiliation
Laboratoire Ampère, École Centrale de Lyon ,Écully ,France
Sieradzki, Ella Tali;
Affiliation
Departments of Microbiology and Civil, Environmental, and Geodetic Engineering, and Center of Microbiome Science, Ohio State University ,Columbus, OH ,United States
Sullivan, Matthew B.;
Affiliation
Department of Electrical Engineering, City University of Hong Kong ,Kowloon ,Hong Kong SAR, China
Sun, Yanni;
Affiliation
Centre for Pathogen Genomics, Department of Microbiology and Immunology, University of Melbourne, at the Doherty Institute for Infection and Immunity ,Melbourne, VIC ,Australia
Wille, Michelle;
Affiliation
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health ,Bethesda, MD ,United States
Wolf, Yuri I.;
Affiliation
Latvian Biomedical Research and Study Centre ,Riga ,Latvia
Zrelovs, Nikita;
Affiliation
The Shmunis School of Biomedicine and Cancer Research, Tel Aviv University ,Tel Aviv ,Israel
Neri, Uri

Improved RNA virus understanding is critical to studying animal and plant health, and environmental processes. However, the continuous and rapid RNA virus evolution makes their identification and characterization challenging. While recent sequence-based advances have led to extensive RNA virus discovery, there is growing variation in how RNA viruses are identified, analyzed, characterized, and reported. To this end, an RdRp Summit was organized and a hybrid meeting took place in Valencia, Spain in May 2023 to convene leading experts with emphasis on early career researchers (ECRs) across diverse scientific communities. Here we synthesize key insights and recommendations and offer these as a first effort to establish a consensus framework for advancing RNA virus discovery. First, we need interoperability through standardized methodologies, data-sharing protocols, metadata provision and interdisciplinary collaborations and offer specific examples as starting points. Second, as an emergent field, we recognize the need to incorporate cutting-edge technologies and knowledge early and often to improve omic-based viral detection and annotation as novel capabilities reveal new biology. Third, we underscore the significance of ECRs in fostering international partnerships to promote inclusivity and equity in virus discovery efforts. The proposed consensus framework serves as a roadmap for the scientific community to collectively contribute to the tremendous challenge of unveiling the RNA virosphere.

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License Holder: Copyright © 2024 Charon, Olendraite, Forgia, Chong, Hillary, Roux, Kupczok, Debat, Sakaguchi, Tahzima, Nakagawa, Babaian, Abroi, Bejerman, Ben Mansour, Brown, Butkovic, Cervera, Charriat, Chen, Chiba, De Coninck, Demina, Dominguez-Huerta, Dubrulle, Gutierrez, Harvey, Jayaraj Mallika, Karapliafis, Lim, Kasibhatla, Mifsud, Nishimura, Ortiz-Baez, Raco, Rivero, Sadiq, Saghaei, San, Shaikh, Sieradzki, Sullivan, Sun, Wille, Wolf, Zrelovs and Neri

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